I gave up trying to get used to it and reversed the direction of the indicator and dials.  Now my brain won't keep yelling at me that "+" should be on the right and "-" should be on the left, as I was taught for years in math classes.  As for zoom and focus direction, no problems for me since I don't own zooms and I don't really manual focus that often. 
 
Putting on/taking off lens does confuse me, though.  It doesn't help that just about everything else around is "righty tighty, lefty loosey."